Datasets:

electricsheepafrica
/

zoonotic-tb-surveillance

id int64	event_type string	residence string	age int64	sex string	hiv_positive int64	occupation string	raw_milk_consumption int64	cattle_contact int64	tb_form string	sputum_collected int64	afb_positive int64	genexpert_done int64	speciation_done int64	m_bovis_confirmed int64	pyrazinamide_resistant int64	treated int64	correct_regimen int64	died int64	herd_size int64	cattle_positive int64	milk_positive int64	detected int64	milk_pasteurization_available int64	meat_inspection_done int64	cattle_tuberculin_tested int64	one_health_coordination float64	year int64
1	abattoir_finding	agro_pastoral	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0.24	2,023
2	human_case	agro_pastoral	48	female	0	household	1	0	extrapulmonary_lymph	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0.18	2,021
3	human_case	pastoral	41	female	0	farmer	1	1	pulmonary	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.25	2,021
4	human_case	rural_farming	38	male	1	household	0	0	extrapulmonary_gi	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0.18	2,022
5	milk_sampling	rural_farming	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0.07	2,020
6	human_case	agro_pastoral	37	female	0	household	0	0	extrapulmonary_gi	0	0	0	0	0	0	1	1	0	0	0	0	1	0	0	0	0.22	2,020
7	milk_sampling	agro_pastoral	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.06	2,023
8	contact_tracing	rural_farming	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.11	2,020
9	human_case	urban	47	male	0	milk_trader	1	0	extrapulmonary_gi	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0.24	2,019
10	cattle_testing	agro_pastoral	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	38	2	0	0	1	0	0	0.05	2,022
11	human_case	urban	19	female	1	butcher	0	1	extrapulmonary_other	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0.35	2,023
12	human_case	rural_farming	9	female	0	household	0	0	pulmonary	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0.11	2,023
13	human_case	rural_farming	34	female	0	herder	0	1	extrapulmonary_other	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.17	2,021
14	human_case	rural_farming	37	female	0	herder	0	1	pulmonary	1	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0.26	2,020
15	human_case	rural_farming	4	male	0	milk_trader	1	0	extrapulmonary_lymph	0	0	0	0	0	0	1	1	0	0	0	0	1	0	0	0	0.34	2,022
16	contact_tracing	agro_pastoral	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0.09	2,020
17	cattle_testing	urban	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	111	19	0	0	0	0	1	0.36	2,023
18	abattoir_finding	pastoral	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.16	2,021
19	cattle_testing	rural_farming	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	8	1	0	0	0	0	0	0.57	2,019
20	milk_sampling	pastoral	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0.17	2,020
21	human_case	pastoral	31	male	1	milk_trader	0	0	pulmonary	1	0	0	1	1	1	1	1	0	0	0	0	0	1	0	0	0.09	2,023
22	human_case	urban	8	female	0	other	0	0	extrapulmonary_lymph	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0.19	2,022
23	human_case	pastoral	8	male	0	farmer	1	1	pulmonary	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0.32	2,022
24	milk_sampling	agro_pastoral	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.36	2,019
25	abattoir_finding	pastoral	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0.4	2,023
26	abattoir_finding	urban	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0.14	2,022
27	milk_sampling	agro_pastoral	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.15	2,019
28	human_case	pastoral	40	male	0	household	1	0	extrapulmonary_gi	0	0	0	0	0	0	1	1	0	0	0	0	0	1	1	0	0.09	2,021
29	abattoir_finding	rural_farming	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.38	2,022
30	contact_tracing	pastoral	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0.17	2,019
31	cattle_testing	peri_urban	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	12	1	0	0	0	0	0	0.05	2,023
32	abattoir_finding	agro_pastoral	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0.24	2,019
33	abattoir_finding	pastoral	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0.17	2,022
34	human_case	pastoral	47	female	0	herder	0	1	pulmonary	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0.21	2,022
35	milk_sampling	peri_urban	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0.43	2,022
36	human_case	rural_farming	42	female	0	herder	1	1	pulmonary	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0.04	2,022
37	milk_sampling	urban	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.23	2,020
38	cattle_testing	agro_pastoral	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	37	5	0	0	0	1	0	0.09	2,019
39	cattle_testing	agro_pastoral	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	65	8	0	0	0	0	0	0.29	2,023
40	cattle_testing	agro_pastoral	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	30	3	0	0	0	0	0	0.21	2,022
41	abattoir_finding	agro_pastoral	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0.35	2,019
42	human_case	agro_pastoral	30	male	0	herder	0	1	extrapulmonary_gi	0	0	0	0	0	0	1	1	0	0	0	0	0	1	0	0	0.51	2,023
43	cattle_testing	rural_farming	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	10	1	0	0	1	1	0	0.3	2,020
44	abattoir_finding	urban	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.39	2,021
45	human_case	peri_urban	38	male	0	herder	0	1	pulmonary	1	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0.19	2,023
46	human_case	agro_pastoral	45	male	0	butcher	0	1	extrapulmonary_gi	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.11	2,021
47	contact_tracing	rural_farming	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0.14	2,021
48	cattle_testing	rural_farming	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	28	2	0	0	0	0	0	0.37	2,023
49	contact_tracing	rural_farming	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.46	2,021
50	milk_sampling	rural_farming	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.17	2,020
51	human_case	peri_urban	27	female	0	other	0	0	pulmonary	1	0	0	0	0	0	1	1	0	0	0	0	0	1	1	0	0.05	2,023
52	abattoir_finding	rural_farming	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0.17	2,019
53	cattle_testing	rural_farming	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	41	4	0	0	0	1	0	0.41	2,023
54	human_case	rural_farming	30	male	0	herder	1	1	pulmonary	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0.07	2,022
55	cattle_testing	urban	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	109	9	0	0	1	1	1	0.12	2,022
56	cattle_testing	agro_pastoral	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	9	2	0	0	0	0	0	0.03	2,023
57	cattle_testing	rural_farming	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	51	7	0	0	0	0	0	0.51	2,022
58	abattoir_finding	peri_urban	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.17	2,020
59	milk_sampling	pastoral	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2,019
60	human_case	pastoral	20	male	0	farmer	1	1	pulmonary	1	1	0	0	0	0	1	1	0	0	0	0	0	0	1	0	0.1	2,019
61	cattle_testing	agro_pastoral	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	10	1	0	0	0	1	0	0	2,021
62	milk_sampling	pastoral	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0.23	2,019
63	human_case	urban	37	male	1	herder	0	1	pulmonary	1	0	0	1	0	0	0	0	1	0	0	0	0	0	1	0	0.1	2,022
64	contact_tracing	agro_pastoral	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.37	2,021
65	cattle_testing	pastoral	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	38	4	0	1	1	0	0	0.43	2,021
66	abattoir_finding	rural_farming	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0.23	2,023
67	human_case	pastoral	61	female	0	other	0	0	extrapulmonary_lymph	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0.21	2,022
68	human_case	peri_urban	35	female	0	farmer	0	1	extrapulmonary_lymph	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0.25	2,021
69	human_case	peri_urban	28	female	0	other	1	1	extrapulmonary_gi	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0.21	2,022
70	abattoir_finding	peri_urban	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0.11	2,019
71	human_case	rural_farming	29	female	0	household	0	0	pulmonary	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0.26	2,022
72	cattle_testing	urban	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	15	0	0	0	0	1	0	0.06	2,022
73	cattle_testing	agro_pastoral	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	36	4	0	0	0	0	0	0.22	2,020
74	abattoir_finding	peri_urban	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.09	2,020
75	cattle_testing	rural_farming	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	5	1	0	0	0	1	0	0.18	2,023
76	milk_sampling	rural_farming	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.41	2,023
77	human_case	peri_urban	15	male	0	herder	0	1	pulmonary	1	0	0	0	0	0	1	1	0	0	0	0	0	0	1	0	0.12	2,023
78	abattoir_finding	rural_farming	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.23	2,020
79	contact_tracing	agro_pastoral	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0.21	2,019
80	human_case	urban	48	female	0	farmer	0	1	pulmonary	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0.38	2,023
81	milk_sampling	peri_urban	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.22	2,023
82	human_case	pastoral	48	male	0	household	1	0	pulmonary	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.31	2,023
83	human_case	agro_pastoral	39	female	0	butcher	0	1	pulmonary	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.32	2,022
84	cattle_testing	agro_pastoral	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	46	3	0	1	0	0	0	0.27	2,021
85	human_case	peri_urban	10	male	0	herder	0	1	pulmonary	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0.35	2,023
86	cattle_testing	rural_farming	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	42	4	0	0	0	0	0	0.3	2,021
87	cattle_testing	agro_pastoral	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	32	3	0	0	0	0	0	0.27	2,022
88	abattoir_finding	peri_urban	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0.27	2,020
89	milk_sampling	agro_pastoral	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0.09	2,023
90	abattoir_finding	pastoral	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0.11	2,020
91	cattle_testing	rural_farming	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	19	6	0	1	1	0	0	0.23	2,022
92	human_case	peri_urban	44	male	0	butcher	0	1	extrapulmonary_lymph	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0.36	2,021
93	human_case	rural_farming	18	female	0	household	0	0	extrapulmonary_lymph	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0.26	2,019
94	human_case	pastoral	23	female	1	household	0	1	pulmonary	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0.22	2,022
95	abattoir_finding	agro_pastoral	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0.3	2,019
96	human_case	pastoral	50	male	0	herder	0	1	pulmonary	1	0	0	0	0	0	1	1	0	0	0	0	0	0	1	0	0.1	2,022
97	abattoir_finding	rural_farming	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0.21	2,021
98	abattoir_finding	peri_urban	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0.06	2,022
99	milk_sampling	pastoral	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0.2	2,021
100	cattle_testing	urban	0	na	0	na	0	0	na	0	0	0	0	0	0	0	0	0	50	4	0	0	1	0	0	0.09	2,020

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Zoonotic TB (M. bovis) Surveillance

Abstract

Synthetic dataset modeling zoonotic TB surveillance across three SSA scenarios. Captures human M. bovis cases, cattle testing, milk sampling, abattoir findings, raw milk consumption, species identification, pyrazinamide resistance, and One Health coordination. Based on WHO (2020) Roadmap, Müller et al. (2013), Cosivi et al. (1998).

Parameterization Evidence

Parameter	Value	Source	Year
M. bovis share of pulmonary TB Africa	2.8%	WHO Roadmap	2020
Pastoralist TB from M. bovis	5-30%	Müller et al. Emerg Inf Dis	2013
Bovine TB herd prevalence SSA	1-15%	Cosivi et al. Emerg Inf Dis	1998
Pyrazinamide intrinsic resistance	100% M. bovis	WHO	2020

Validation

Usage

from datasets import load_dataset
ds = load_dataset("electricsheepafrica/zoonotic-tb-surveillance", name="moderate_awareness")
df = ds['train'].to_pandas()

References

WHO (2020). Roadmap for zoonotic tuberculosis
Müller B et al. (2013). Zoonotic M. bovis-induced TB. Emerg Inf Dis. DOI: 10.3201/eid1906.120543
Cosivi O et al. (1998). Zoonotic TB in developing countries. Emerg Inf Dis. DOI: 10.3201/eid0401.980108
Olea-Popelka F et al. (2017). Zoonotic TB call for action. Lancet Inf Dis. DOI: 10.1016/S1473-3099(16)30139-6
Sichewo PR et al. (2020). Risk factors zoonotic TB. Pathogens. DOI: 10.3390/pathogens9010070

License

CC-BY-4.0

Downloads last month: 32

Size of downloaded dataset files:

2.87 MB

Size of the auto-converted Parquet files:

617 kB

Number of rows:

30,000