Datasets:

electricsheepafrica
/

mpox-surveillance

id int64	age int64	sex string	residence string	hiv_positive int64	transmission_route string	animal_exposure int64	animal_species_contact string	bushmeat_consumption int64	rash int64	fever int64	lymphadenopathy int64	lesion_count int64	genital_lesions int64	secondary_infection int64	encephalitis int64	severity string	detected int64	pcr_tested int64	pcr_confirmed int64	clade string	isolated int64	hospitalized int64	tecovirimat_available int64	vaccinated int64	contact_tracing int64	contacts_identified int64	died int64	duration_illness_days int64	one_health_coordination float64	year int64
1	19	female	rural	0	unknown	0	none	0	1	1	1	40	0	0	0	moderate	1	1	1	clade_I	1	0	0	0	1	5	0	24	0.66	2,024
2	21	male	urban	0	household_contact	0	none	0	1	1	0	7	0	0	0	mild	1	1	1	clade_I	1	0	0	1	0	0	0	10	0.36	2,023
3	27	male	rural	0	household_contact	0	none	0	1	1	1	37	1	0	0	moderate	1	0	0	clade_I	1	1	0	0	0	0	0	22	0.48	2,023
4	23	male	urban	0	household_contact	0	none	0	1	1	1	34	0	0	0	moderate	1	1	1	clade_I	0	0	0	0	0	0	0	26	0.29	2,022
5	6	male	urban	0	household_contact	0	none	0	1	0	0	13	0	0	0	mild	0	0	0	clade_I	1	0	0	1	0	0	0	26	0.44	2,021
6	23	female	rural	0	household_contact	1	unknown	0	1	1	1	205	0	0	0	severe	1	1	1	clade_I	0	1	0	0	1	3	0	33	0.42	2,021
7	18	male	rural	0	sexual_contact	0	none	0	1	0	1	17	1	0	0	mild	1	1	0	clade_I	0	0	0	0	0	0	0	30	0.43	2,023
8	34	female	peri_urban	0	household_contact	1	unknown	1	1	1	0	61	0	0	0	moderate	0	0	0	clade_I	1	1	0	0	0	0	0	7	0.39	2,023
9	21	female	rural	0	animal_contact	1	rodent	0	1	1	1	30	0	0	0	mild	1	1	1	clade_I	1	0	0	0	0	0	0	15	0.37	2,023
10	33	male	forest_adjacent	0	household_contact	0	none	0	1	0	1	13	0	0	0	mild	0	0	0	clade_I	0	0	0	0	0	0	0	33	0.75	2,020
11	33	female	peri_urban	0	sexual_contact	0	none	0	1	1	1	16	1	1	0	mild	0	0	0	clade_I	0	0	0	0	0	0	0	21	0.31	2,020
12	58	male	rural	0	animal_contact	1	primate	0	1	1	1	29	0	0	0	mild	0	0	0	clade_I	0	0	0	0	0	0	0	20	0.37	2,023
13	4	male	rural	0	animal_contact	1	none	0	1	1	1	15	0	0	0	mild	0	0	0	clade_I	0	0	0	0	0	0	0	33	0.45	2,024
14	30	male	rural	0	sexual_contact	0	none	0	1	1	1	85	1	0	0	moderate	0	0	0	clade_I	0	0	0	0	0	0	0	21	0.25	2,021
15	23	male	rural	0	household_contact	0	none	0	1	1	1	12	0	1	0	mild	0	0	0	clade_I	0	0	0	0	0	0	0	22	0.43	2,022
16	28	male	urban	0	household_contact	0	none	0	1	1	0	23	0	0	0	mild	0	0	0	clade_I	0	0	0	0	0	0	0	7	0.59	2,023
17	13	female	peri_urban	0	household_contact	0	none	0	1	0	0	6	0	0	0	mild	0	0	0	clade_I	1	0	0	0	0	0	0	26	0.43	2,020
18	28	female	urban	0	sexual_contact	1	rodent	1	1	1	1	3	1	0	0	mild	0	0	0	clade_I	0	0	0	1	0	0	0	30	0.41	2,024
19	15	male	peri_urban	0	unknown	0	none	0	1	1	1	18	0	1	0	mild	1	0	0	clade_I	0	0	0	0	0	0	0	30	0.36	2,023
20	26	female	urban	0	household_contact	0	none	0	1	1	1	47	0	0	0	moderate	1	1	1	clade_I	0	1	1	0	0	0	0	14	0.44	2,024
21	31	male	forest_adjacent	0	household_contact	0	none	0	1	1	0	21	0	0	0	mild	0	0	0	clade_I	1	0	0	0	0	0	0	25	0.53	2,020
22	34	male	peri_urban	0	animal_contact	1	unknown	0	1	1	1	6	0	0	0	mild	0	0	0	clade_I	1	0	0	0	0	0	0	21	0.39	2,022
23	36	male	forest_adjacent	0	household_contact	0	none	0	0	1	1	14	0	0	0	mild	0	0	0	clade_I	1	0	0	0	0	0	0	10	0.48	2,023
24	6	male	urban	0	sexual_contact	0	none	0	1	1	1	8	1	0	0	mild	0	0	0	clade_I	0	0	0	0	0	0	0	15	0.28	2,022
25	24	male	peri_urban	0	sexual_contact	0	none	0	1	1	1	11	1	0	0	mild	1	1	0	clade_I	0	0	0	0	0	0	0	23	0.11	2,024
26	19	male	rural	0	household_contact	0	none	0	0	0	1	85	0	0	0	moderate	1	0	0	clade_I	0	0	0	0	1	6	0	24	0.28	2,023
27	34	female	rural	0	animal_contact	1	rodent	0	1	1	1	12	1	0	0	mild	0	0	0	clade_I	1	0	0	0	0	0	0	18	0.17	2,022
28	28	male	urban	0	sexual_contact	0	none	0	0	1	1	17	1	0	0	mild	0	0	0	clade_I	1	0	0	0	0	0	0	32	0.27	2,022
29	4	female	peri_urban	0	household_contact	0	none	0	1	1	1	18	0	0	0	mild	0	0	0	clade_I	0	0	0	0	0	0	0	11	0.5	2,021
30	33	male	forest_adjacent	0	household_contact	0	none	0	0	1	0	13	0	1	0	mild	1	0	0	clade_I	0	0	0	0	1	2	0	14	0.29	2,023
31	27	male	peri_urban	1	sexual_contact	0	none	0	1	1	1	19	1	0	1	severe	0	0	0	clade_I	0	1	0	0	0	0	0	20	0.54	2,022
32	20	male	peri_urban	0	animal_contact	1	none	0	1	1	1	24	1	1	0	mild	1	0	0	clade_I	1	0	0	0	0	0	1	27	0.62	2,021
33	21	male	forest_adjacent	0	sexual_contact	0	none	0	1	1	1	33	1	0	0	moderate	1	1	1	clade_I	1	1	0	0	0	0	0	30	0.43	2,023
34	32	female	urban	0	unknown	1	rodent	0	1	1	0	20	0	0	0	mild	1	1	1	clade_I	0	0	0	1	0	0	0	28	0.4	2,023
35	33	female	rural	0	sexual_contact	0	none	0	1	1	1	12	1	0	0	mild	0	0	0	clade_I	1	0	0	0	0	0	0	17	0.57	2,024
36	18	male	rural	0	household_contact	0	none	0	1	1	0	69	0	0	0	moderate	0	0	0	clade_I	1	1	0	1	0	0	0	21	0.61	2,024
37	33	female	rural	0	sexual_contact	0	none	0	1	1	1	24	1	1	0	mild	1	0	0	clade_I	1	0	0	0	0	0	0	26	0.24	2,023
38	29	male	rural	0	sexual_contact	0	none	0	1	1	1	18	0	0	0	mild	0	0	0	clade_I	1	0	0	0	0	0	0	7	0.2	2,023
39	25	male	urban	0	household_contact	0	none	0	1	1	1	21	0	0	0	mild	1	0	0	clade_I	1	0	0	0	1	6	0	30	0.17	2,021
40	31	female	rural	0	household_contact	0	none	0	1	1	1	28	0	0	0	mild	0	0	0	clade_I	1	0	0	1	0	0	0	22	0.51	2,023
41	32	male	urban	0	sexual_contact	0	none	0	1	1	0	7	1	0	0	mild	0	0	0	clade_I	0	0	0	0	0	0	0	13	0.39	2,020
42	27	male	rural	0	household_contact	0	none	0	1	0	1	8	0	0	0	mild	0	0	0	clade_I	0	0	0	0	0	0	0	23	0.48	2,023
43	26	female	peri_urban	0	household_contact	0	none	0	1	1	0	22	0	0	0	mild	1	1	1	clade_I	1	0	0	0	0	0	0	23	0.25	2,021
44	13	male	rural	0	household_contact	1	rodent	0	1	1	1	3	0	0	0	mild	0	0	0	clade_I	1	0	0	0	0	0	0	24	0.34	2,024
45	24	female	forest_adjacent	0	household_contact	0	none	0	1	1	1	13	0	0	0	mild	0	0	0	clade_I	0	0	0	0	0	0	0	31	0.42	2,022
46	34	male	urban	0	sexual_contact	0	none	0	1	1	0	63	1	0	0	moderate	1	0	0	clade_I	1	1	0	0	0	0	0	22	0.38	2,024
47	31	female	urban	0	household_contact	0	none	0	1	1	1	23	0	0	0	mild	1	0	0	clade_I	0	0	0	0	1	2	0	11	0.3	2,023
48	44	female	rural	0	animal_contact	1	unknown	1	1	1	1	28	1	0	0	mild	1	0	0	clade_I	0	0	0	0	0	0	0	19	0.32	2,021
49	42	male	forest_adjacent	0	sexual_contact	0	none	0	1	1	1	20	1	1	0	mild	1	0	0	clade_I	1	0	0	0	0	0	0	21	0.4	2,024
50	15	male	rural	0	sexual_contact	0	none	0	1	1	0	14	1	0	0	mild	1	1	0	clade_I	0	0	0	0	1	4	1	11	0.36	2,023
51	28	male	rural	0	animal_contact	1	rodent	0	1	1	1	8	0	0	0	mild	1	0	0	clade_I	1	0	0	1	1	5	0	8	0.13	2,021
52	29	female	rural	0	animal_contact	1	none	1	1	1	0	12	0	0	0	mild	0	0	0	clade_I	1	0	0	0	0	0	0	24	0.47	2,021
53	19	male	peri_urban	0	sexual_contact	0	none	0	1	1	1	43	1	0	0	moderate	0	0	0	clade_I	1	1	0	0	0	0	0	27	0.41	2,022
54	29	male	forest_adjacent	0	household_contact	0	none	0	1	0	1	26	0	1	0	mild	0	0	0	clade_I	0	0	1	0	0	0	0	7	0.5	2,020
55	16	female	peri_urban	0	household_contact	0	none	0	1	1	1	39	0	0	0	moderate	0	0	0	clade_I	0	1	0	0	0	0	0	19	0.1	2,023
56	2	male	urban	0	sexual_contact	0	none	0	1	0	1	27	1	0	0	mild	0	0	0	clade_I	1	0	0	1	0	0	0	23	0.21	2,021
57	11	male	forest_adjacent	0	sexual_contact	0	none	0	1	1	0	16	1	0	0	mild	0	0	0	clade_I	0	0	0	1	0	0	0	27	0.39	2,020
58	17	male	urban	0	household_contact	0	none	0	1	1	1	14	1	0	0	mild	1	1	0	clade_I	1	0	0	0	0	0	0	23	0.21	2,021
59	35	male	forest_adjacent	0	sexual_contact	0	none	0	1	1	1	21	1	1	0	mild	1	0	0	clade_I	0	0	1	0	1	6	0	17	0.33	2,023
60	36	female	urban	0	sexual_contact	0	none	0	1	1	1	119	1	0	0	severe	0	0	0	clade_I	0	1	0	0	0	0	0	26	0.51	2,024
61	27	male	urban	0	household_contact	0	none	0	1	0	1	49	0	1	0	moderate	1	0	0	clade_I	1	0	0	0	0	0	0	24	0.39	2,024
62	28	female	rural	0	sexual_contact	0	none	0	0	1	1	44	1	0	0	moderate	1	0	0	clade_I	1	1	0	0	0	0	0	35	0.23	2,021
63	34	male	forest_adjacent	0	sexual_contact	0	none	0	1	1	1	23	1	1	0	mild	0	0	0	clade_I	1	0	0	0	0	0	0	25	0.26	2,024
64	43	male	rural	0	household_contact	0	none	0	1	1	1	31	0	0	0	moderate	0	0	0	clade_I	0	0	0	0	0	0	0	7	0.37	2,024
65	40	male	urban	0	household_contact	0	none	0	1	1	0	99	0	0	0	moderate	0	0	0	clade_I	0	0	0	0	0	0	0	30	0.37	2,022
66	35	male	urban	1	sexual_contact	0	none	0	1	1	1	37	0	0	0	moderate	0	0	0	clade_I	0	1	0	0	0	0	0	26	0.21	2,022
67	33	male	forest_adjacent	0	animal_contact	1	none	0	1	1	1	31	0	0	0	moderate	1	1	1	clade_I	0	0	0	0	0	0	0	24	0.44	2,024
68	19	female	urban	0	household_contact	0	none	0	1	1	0	16	0	0	0	mild	1	1	0	clade_I	0	0	0	0	1	1	0	26	0.54	2,024
69	6	male	urban	0	household_contact	0	none	0	1	1	0	47	0	0	0	moderate	0	0	0	clade_I	0	0	0	0	0	0	0	10	0.41	2,023
70	28	female	forest_adjacent	0	sexual_contact	0	none	0	1	1	0	4	0	0	0	mild	0	0	0	clade_I	0	0	0	0	0	0	0	21	0.43	2,024
71	14	female	peri_urban	0	household_contact	0	none	0	1	1	1	6	0	0	0	mild	1	1	0	clade_I	1	0	0	0	1	6	0	37	0.19	2,020
72	25	female	rural	0	household_contact	0	none	0	1	1	0	12	0	0	0	mild	0	0	0	clade_I	0	0	0	0	0	0	0	11	0.53	2,021
73	15	male	urban	0	household_contact	0	none	0	1	1	0	19	0	0	0	mild	1	1	1	clade_I	0	0	0	0	1	4	0	17	0.51	2,023
74	23	male	peri_urban	0	sexual_contact	0	none	0	1	1	1	10	1	0	0	mild	1	1	1	clade_I	0	0	0	0	0	0	0	11	0.6	2,023
75	16	male	rural	0	animal_contact	1	none	0	1	1	1	48	0	1	0	moderate	1	1	1	clade_I	0	0	1	0	1	5	0	7	0.46	2,023
76	39	female	urban	0	household_contact	0	none	0	1	0	0	29	0	0	0	mild	1	1	0	clade_I	1	0	0	0	0	0	0	26	0.41	2,022
77	35	male	rural	0	sexual_contact	0	none	0	1	1	1	6	1	0	0	mild	0	0	0	clade_I	1	0	0	0	0	0	0	18	0.48	2,020
78	28	female	urban	0	household_contact	0	none	0	1	1	0	22	0	0	0	mild	1	1	1	clade_I	0	0	0	0	0	0	0	33	0.57	2,022
79	13	female	urban	0	household_contact	0	none	0	1	1	0	30	0	0	0	mild	1	1	1	clade_I	0	0	0	0	0	0	0	28	0.47	2,020
80	18	male	forest_adjacent	0	sexual_contact	0	none	0	1	1	0	51	1	0	0	moderate	1	0	0	clade_I	1	0	0	0	0	0	0	16	0.28	2,022
81	12	male	forest_adjacent	0	household_contact	0	none	0	1	0	1	10	0	0	0	mild	0	0	0	clade_I	1	0	0	0	0	0	0	14	0.64	2,024
82	12	female	rural	0	household_contact	0	none	0	1	1	0	11	0	1	0	mild	1	1	1	clade_I	0	0	0	0	1	2	0	7	0.43	2,022
83	31	female	peri_urban	0	household_contact	1	none	1	1	1	0	30	1	0	0	mild	1	0	0	clade_I	0	0	0	0	1	3	0	20	0.27	2,024
84	17	female	rural	0	animal_contact	1	unknown	1	1	1	1	29	0	0	0	mild	0	0	0	clade_I	0	0	0	0	0	0	0	22	0.34	2,024
85	36	male	peri_urban	0	sexual_contact	0	none	0	1	1	1	33	0	0	0	moderate	0	0	0	clade_I	1	0	0	1	0	0	0	29	0.74	2,024
86	35	female	rural	0	sexual_contact	0	none	0	1	1	1	15	1	0	1	severe	0	0	0	clade_I	1	1	0	0	0	0	0	21	0.25	2,022
87	8	male	urban	1	household_contact	0	none	0	0	0	1	13	0	0	0	mild	0	0	0	clade_I	0	0	0	0	0	0	0	27	0.3	2,021
88	32	male	rural	1	sexual_contact	0	none	0	1	0	1	23	1	1	0	mild	1	1	1	clade_I	0	0	0	0	1	3	0	22	0.66	2,023
89	40	male	forest_adjacent	0	unknown	0	none	0	1	1	1	25	0	0	0	mild	1	1	0	clade_I	1	0	0	0	1	3	0	22	0.47	2,022
90	36	male	urban	0	unknown	0	none	0	1	1	0	54	0	0	0	moderate	1	1	1	clade_I	0	1	0	0	0	0	0	25	0.36	2,022
91	11	female	rural	0	animal_contact	1	primate	0	1	1	1	8	0	0	0	mild	1	0	0	clade_I	1	0	0	0	0	0	0	25	0.53	2,023
92	34	male	peri_urban	0	unknown	0	none	0	1	1	1	20	0	0	0	mild	0	0	0	clade_I	0	0	0	0	0	0	0	22	0.42	2,022
93	32	male	urban	0	sexual_contact	0	none	0	1	0	0	9	1	0	0	mild	0	0	0	clade_I	1	0	0	1	0	0	0	15	0.39	2,024
94	29	male	rural	0	household_contact	0	none	0	1	1	0	2	1	0	0	mild	1	1	1	clade_I	0	0	0	0	1	2	0	7	0.25	2,021
95	10	male	peri_urban	0	animal_contact	1	none	0	1	1	1	5	0	1	0	mild	1	0	0	clade_I	1	0	0	0	1	1	0	7	0.35	2,023
96	49	male	forest_adjacent	0	sexual_contact	1	none	0	1	1	1	27	1	0	0	mild	1	1	1	clade_I	1	0	0	0	0	0	0	27	0.29	2,022
97	29	male	forest_adjacent	0	animal_contact	1	none	1	1	1	1	17	0	0	0	mild	1	1	1	clade_I	0	0	0	0	0	0	0	7	0.42	2,022
98	45	female	forest_adjacent	0	household_contact	0	none	0	1	1	1	9	0	1	0	mild	0	0	0	clade_I	1	0	0	0	0	0	0	16	0.41	2,024
99	37	male	peri_urban	0	unknown	0	none	0	1	1	0	4	0	0	0	mild	0	0	0	clade_I	0	0	1	0	0	0	0	25	0.35	2,024
100	23	female	rural	0	animal_contact	1	rodent	0	1	1	1	70	0	0	0	moderate	0	0	0	clade_I	0	1	0	0	0	0	0	19	0.59	2,020

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Mpox (Monkeypox) Surveillance

Abstract

Synthetic dataset modeling mpox surveillance across three SSA scenarios: endemic Clade I (DRC), Clade Ib outbreak (East Africa), and sporadic West Africa (Clade II). Captures transmission routes, clinical features, PCR confirmation, contact tracing, vaccination, and One Health coordination. Based on WHO (2023-2024), Bunge et al. (2022), Rimoin et al. (2010).

Parameterization Evidence

Parameter	Value	Source	Year
Clade I CFR	1-10%	WHO fact sheet	2023
Clade II CFR	<1%	WHO fact sheet	2023
DRC endemic cases/yr	10,000-15,000 suspected	WHO	2023
2022 global outbreak	90,000+ cases	WHO	2023
Clade Ib sexual transmission	Identified 2024	WHO Africa	2024
Incidence increase since smallpox vax	20-fold in 30 yrs	Rimoin et al. PNAS	2010

Validation

Usage

from datasets import load_dataset
ds = load_dataset("electricsheepafrica/mpox-surveillance", name="outbreak_clade_Ib")
df = ds['train'].to_pandas()

References

WHO (2023). Mpox fact sheet
Bunge EM et al. (2022). Changing epidemiology of mpox. PLOS NTDs. DOI: 10.1371/journal.pntd.0010141
Rimoin AW et al. (2010). Major increase in mpox DRC. PNAS. DOI: 10.1073/pnas.1005769107
WHO Africa (2024). Clade Ib outbreak DRC/East Africa

License

CC-BY-4.0

Downloads last month: 25

Size of downloaded dataset files:

3.37 MB

Size of the auto-converted Parquet files:

658 kB

Number of rows:

30,000