Datasets:

electricsheepafrica
/

leptospirosis-environmental

id int64	age int64	sex string	residence string	occupation string	flooding_exposure int64	rodent_exposure int64	animal_contact int64	contaminated_water int64	season string	recent_flood int64	fever int64	jaundice int64	renal_failure int64	hemorrhagic int64	meningitis int64	weil_disease int64	severity string	initial_diagnosis string	lab_tested_lepto int64	mat_positive int64	pcr_positive int64	confirmed_lepto int64	treated_antibiotics int64	hospitalized int64	died int64	environmental_monitoring float64	rodent_control_program int64	one_health_coordination float64	water_sanitation_score float64	year int64
1	34	male	rural_pastoral	urban_informal	1	0	0	1	dry	0	1	0	0	0	0	0	mild	unknown	0	0	0	0	1	0	0	0.05	0	0.19	0.34	2,021
2	47	female	rural_pastoral	rice_farmer	0	1	1	1	dry	0	1	0	0	0	0	0	mild	malaria	0	0	0	0	0	0	0	0.22	0	0.27	0.28	2,023
3	31	male	rural_farming	rice_farmer	1	1	1	1	dry	0	1	0	0	0	0	0	mild	leptospirosis	0	0	0	0	0	0	0	0	0	0.22	0.43	2,022
4	41	male	rural_farming	livestock_herder	0	0	1	1	wet	1	1	0	0	0	0	0	mild	malaria	0	0	0	0	1	0	1	0.11	0	0.26	0.3	2,022
5	36	female	rural_farming	fisher	1	0	0	1	wet	1	0	0	0	0	0	0	mild	unknown	0	0	0	0	0	0	0	0.05	0	0.3	0.15	2,021
6	33	male	rural_pastoral	urban_informal	0	1	0	0	wet	1	1	1	0	0	0	0	moderate	leptospirosis	0	0	0	0	1	0	0	0.01	0	0.17	0.18	2,021
7	34	male	rural_farming	abattoir_worker	0	0	1	0	wet	1	1	0	1	0	0	0	moderate	leptospirosis	0	0	0	0	1	0	0	0.33	0	0.32	0.3	2,020
8	16	male	rural_farming	child	0	1	0	1	wet	1	1	1	1	0	0	1	severe	unknown	0	0	0	0	0	0	0	0.17	0	0.33	0.41	2,022
9	32	female	peri_urban	rice_farmer	0	1	1	1	wet	0	1	0	0	0	0	0	mild	malaria	1	1	1	1	0	0	0	0.15	0	0.05	0.25	2,023
10	42	female	urban_slum	rice_farmer	0	1	1	0	wet	0	0	0	0	1	0	0	mild	hepatitis	0	0	0	0	1	0	0	0.4	0	0.1	0.33	2,021
11	21	male	urban_slum	child	0	1	0	0	dry	0	1	0	0	0	0	0	mild	unknown	0	0	0	0	1	0	0	0.04	0	0.55	0.22	2,022
12	34	female	peri_urban	rice_farmer	0	1	1	1	wet	1	1	1	0	1	0	0	moderate	hepatitis	0	0	0	0	0	0	0	0.08	1	0.19	0.61	2,022
13	35	male	rural_farming	abattoir_worker	1	0	1	1	wet	0	1	0	0	0	0	0	mild	unknown	0	0	0	0	0	0	0	0.12	0	0.38	0.05	2,021
14	32	male	urban_slum	fisher	0	1	0	0	wet	1	1	0	0	0	0	0	mild	malaria	0	0	0	0	0	0	0	0.23	0	0.21	0.28	2,022
15	13	female	rural_pastoral	rice_farmer	0	1	1	0	wet	0	1	0	0	0	0	0	mild	unknown	0	0	0	0	1	0	0	0.08	0	0.12	0.5	2,022
16	3	male	rural_pastoral	child	0	0	0	1	wet	1	1	0	0	0	0	0	mild	unknown	0	0	0	0	1	0	0	0.14	0	0.25	0.48	2,021
17	28	female	rural_farming	other	0	1	0	0	dry	0	0	1	0	0	0	0	moderate	typhoid	0	0	0	0	1	1	0	0.02	0	0.1	0.41	2,023
18	33	male	rural_pastoral	child	1	0	1	1	dry	0	1	0	1	0	1	0	moderate	malaria	0	0	0	0	0	1	0	0.12	1	0.3	0.12	2,023
19	9	female	urban_slum	child	0	0	0	0	wet	1	1	0	0	0	0	0	mild	malaria	0	0	0	0	1	0	0	0.23	0	0.03	0.41	2,022
20	36	female	rural_farming	rice_farmer	1	1	1	1	dry	0	1	0	0	0	0	0	mild	unknown	0	0	0	0	0	0	0	0.12	0	0.25	0.34	2,021
21	57	male	urban_slum	livestock_herder	1	1	1	1	wet	0	1	0	0	0	0	0	mild	leptospirosis	0	0	0	0	0	0	0	0.05	0	0.15	0.33	2,022
22	38	female	rural_farming	fisher	0	1	0	0	dry	0	1	0	0	0	0	0	mild	unknown	0	0	0	0	1	0	0	0.26	1	0.17	0.41	2,020
23	43	female	urban_slum	child	0	1	1	0	wet	1	0	0	0	0	0	0	mild	hepatitis	0	0	0	0	0	0	1	0.23	0	0.28	0.28	2,023
24	52	male	rural_pastoral	other	1	1	0	1	wet	0	1	0	0	0	0	0	mild	leptospirosis	0	0	0	0	1	0	0	0.26	0	0.11	0.16	2,023
25	33	female	rural_farming	urban_informal	1	1	0	1	wet	0	1	0	0	0	0	0	mild	typhoid	0	0	0	0	0	0	0	0.1	0	0.19	0.4	2,022
26	19	male	urban_slum	rice_farmer	0	1	1	0	wet	1	1	0	0	0	0	0	mild	typhoid	0	0	0	0	0	0	0	0.03	0	0.07	0.45	2,022
27	13	male	rural_farming	other	0	1	0	0	wet	1	1	0	0	0	0	0	mild	unknown	0	0	0	0	0	0	1	0.09	0	0.26	0.45	2,019
28	6	male	urban_slum	urban_informal	0	0	0	0	dry	0	1	1	0	0	1	0	moderate	typhoid	0	0	0	0	1	1	0	0.29	0	0	0.55	2,023
29	24	male	rural_farming	livestock_herder	0	1	1	1	wet	0	1	0	0	0	0	0	mild	typhoid	0	0	0	0	0	0	0	0.17	0	0.42	0.34	2,021
30	14	male	urban_slum	fisher	0	1	0	0	dry	0	1	0	0	0	0	0	mild	unknown	0	0	0	0	0	0	0	0.18	0	0.04	0.46	2,020
31	63	male	rural_pastoral	urban_informal	0	1	0	0	dry	0	1	0	0	0	0	0	mild	hepatitis	0	0	0	0	0	0	0	0.25	0	0.1	0.27	2,020
32	16	male	rural_farming	livestock_herder	1	1	1	1	wet	1	1	1	0	0	0	0	moderate	leptospirosis	0	0	0	0	0	1	0	0.03	0	0.28	0.32	2,023
33	28	male	peri_urban	fisher	0	1	0	0	wet	0	1	1	1	0	0	1	severe	leptospirosis	0	0	0	0	1	1	0	0.27	0	0	0.37	2,023
34	55	male	rural_pastoral	child	1	0	0	1	wet	0	1	0	0	0	0	0	mild	malaria	0	0	0	0	0	0	1	0.18	0	0.21	0.29	2,022
35	53	female	peri_urban	other	0	1	1	0	wet	0	0	1	1	0	0	1	severe	leptospirosis	0	0	0	0	0	0	1	0.08	0	0.26	0.41	2,023
36	28	male	peri_urban	child	1	0	0	1	wet	0	1	0	0	0	0	0	mild	typhoid	1	0	0	0	0	0	1	0.18	0	0.23	0.39	2,023
37	23	male	rural_pastoral	other	1	1	0	1	dry	0	1	0	0	0	0	0	mild	typhoid	0	0	0	0	0	0	0	0.06	0	0.37	0.58	2,019
38	56	male	rural_farming	child	1	1	0	1	wet	0	1	0	0	0	0	0	mild	malaria	0	0	0	0	1	0	0	0	0	0.08	0.19	2,023
39	31	male	peri_urban	rice_farmer	0	1	1	1	wet	0	0	0	0	0	0	0	mild	malaria	0	0	0	0	0	0	0	0.24	0	0.06	0.23	2,020
40	47	male	urban_slum	child	0	1	1	1	wet	0	1	0	0	0	0	0	mild	dengue_like	0	0	0	0	1	0	0	0.36	0	0.05	0.37	2,023
41	19	male	rural_farming	livestock_herder	0	0	1	0	wet	0	1	1	0	0	0	0	moderate	unknown	0	0	0	0	0	0	0	0.13	0	0.2	0.41	2,021
42	53	male	rural_farming	livestock_herder	1	1	1	1	wet	0	1	0	0	0	0	0	mild	malaria	0	0	0	0	0	0	0	0	0	0.26	0.22	2,019
43	49	female	rural_farming	urban_informal	0	1	0	0	wet	1	0	0	1	0	0	0	moderate	malaria	0	0	0	0	0	0	0	0.26	0	0.03	0.41	2,023
44	8	male	rural_farming	child	1	1	0	1	dry	0	0	0	0	0	0	0	mild	malaria	0	0	0	0	0	0	0	0.23	0	0.22	0.46	2,022
45	19	male	rural_farming	rice_farmer	1	0	1	1	dry	0	1	1	0	0	0	0	moderate	unknown	0	0	0	0	0	1	0	0.12	0	0.24	0.4	2,020
46	38	female	rural_pastoral	market_vendor	1	0	0	1	dry	0	1	0	1	0	0	0	moderate	typhoid	0	0	0	0	0	0	0	0.22	0	0.11	0.26	2,023
47	37	female	rural_pastoral	urban_informal	0	0	0	0	wet	0	1	0	0	0	0	0	mild	unknown	0	0	0	0	1	0	1	0.04	0	0.37	0.35	2,023
48	14	male	rural_pastoral	rice_farmer	1	1	1	1	wet	0	0	1	0	0	0	0	moderate	unknown	0	0	0	0	1	0	0	0.12	0	0.2	0.46	2,022
49	20	female	rural_farming	rice_farmer	0	0	1	0	wet	0	1	0	0	0	0	0	mild	unknown	0	0	0	0	0	0	0	0.12	0	0.17	0.37	2,023
50	45	male	rural_farming	rice_farmer	1	1	1	1	wet	0	1	0	0	0	0	0	mild	unknown	0	0	0	0	0	0	0	0.29	0	0.35	0.37	2,023
51	28	female	rural_farming	livestock_herder	1	1	1	1	dry	0	1	1	0	0	0	0	moderate	malaria	0	0	0	0	1	0	0	0.16	0	0.38	0.07	2,020
52	13	female	peri_urban	urban_informal	0	0	0	0	wet	1	1	0	0	0	0	0	mild	unknown	0	0	0	0	0	0	0	0.19	0	0.3	0.26	2,019
53	29	male	rural_pastoral	urban_informal	1	0	0	1	wet	0	1	1	0	0	0	0	moderate	malaria	1	1	0	1	1	1	0	0.08	0	0.09	0.63	2,020
54	42	male	rural_pastoral	other	1	1	1	1	wet	1	1	0	0	0	0	0	mild	leptospirosis	0	0	0	0	0	0	0	0.21	0	0.13	0.23	2,021
55	31	male	rural_farming	rice_farmer	1	1	1	1	wet	0	1	0	0	0	0	0	mild	unknown	0	0	0	0	0	0	0	0.25	0	0.1	0.4	2,022
56	21	male	rural_farming	rice_farmer	1	0	1	1	wet	1	1	0	0	0	0	0	mild	typhoid	0	0	0	0	1	0	0	0.11	0	0.13	0.36	2,019
57	52	male	urban_slum	urban_informal	0	1	0	1	dry	0	1	0	0	0	0	0	mild	malaria	0	0	0	0	0	0	0	0.23	0	0.12	0.22	2,022
58	30	male	urban_slum	child	0	0	0	0	wet	1	1	1	0	0	0	0	moderate	malaria	0	0	0	0	1	0	0	0.27	0	0.13	0.36	2,022
59	33	male	rural_farming	livestock_herder	1	1	1	1	wet	1	1	0	0	0	0	0	mild	hepatitis	0	0	0	0	0	0	0	0.19	1	0.14	0.24	2,023
60	34	female	peri_urban	other	1	0	0	1	wet	1	1	1	0	0	0	0	moderate	malaria	0	0	0	0	1	0	0	0.11	0	0.06	0.52	2,023
61	43	female	rural_pastoral	child	0	1	0	0	wet	0	0	0	0	0	0	0	mild	malaria	0	0	0	0	1	0	0	0.18	0	0.12	0.54	2,019
62	36	male	rural_pastoral	livestock_herder	0	0	1	0	wet	1	1	1	0	0	0	0	moderate	typhoid	0	0	0	0	1	0	0	0	0	0.36	0.26	2,020
63	43	female	rural_farming	urban_informal	0	1	0	0	dry	0	1	1	0	0	0	0	moderate	malaria	0	0	0	0	0	0	0	0.11	0	0.05	0.49	2,021
64	35	male	peri_urban	market_vendor	1	0	0	1	dry	0	1	1	0	0	0	0	moderate	malaria	0	0	0	0	0	0	0	0.19	0	0.11	0.26	2,021
65	43	male	rural_farming	fisher	1	0	1	1	wet	0	1	0	0	0	0	0	mild	malaria	0	0	0	0	1	0	0	0.16	0	0.29	0.26	2,021
66	10	male	peri_urban	livestock_herder	1	0	1	1	dry	0	1	0	0	0	0	0	mild	typhoid	0	0	0	0	1	0	0	0.18	0	0.26	0.11	2,023
67	57	male	urban_slum	fisher	1	1	0	1	dry	0	1	0	0	0	0	0	mild	hepatitis	0	0	0	0	0	0	0	0.26	0	0.18	0.1	2,021
68	37	male	rural_farming	child	1	1	0	1	dry	0	0	0	0	0	0	0	mild	malaria	0	0	0	0	0	0	0	0.07	0	0.25	0.17	2,019
69	21	male	rural_pastoral	urban_informal	1	1	0	1	wet	0	1	0	0	0	0	0	mild	unknown	0	0	0	0	0	0	0	0.15	0	0.24	0.36	2,023
70	12	male	rural_farming	other	1	1	0	1	dry	0	1	0	0	0	0	0	mild	malaria	0	0	0	0	0	0	0	0.13	0	0.25	0.41	2,021
71	33	male	rural_farming	urban_informal	1	1	0	1	wet	0	1	0	0	0	0	0	mild	malaria	0	0	0	0	1	0	0	0.2	0	0	0.4	2,019
72	38	female	rural_pastoral	livestock_herder	0	0	1	0	wet	1	1	0	0	0	0	0	mild	unknown	0	0	0	0	0	0	0	0.15	0	0.02	0.42	2,022
73	23	male	peri_urban	abattoir_worker	0	0	1	0	dry	0	1	1	0	0	0	0	moderate	malaria	0	0	0	0	0	0	0	0.39	0	0.19	0.58	2,023
74	20	male	rural_pastoral	livestock_herder	0	1	1	0	dry	0	1	0	0	0	0	0	mild	unknown	1	1	0	1	0	0	0	0.09	0	0.14	0.39	2,021
75	42	male	rural_farming	livestock_herder	0	0	1	0	wet	0	1	1	0	1	0	0	moderate	dengue_like	0	0	0	0	0	0	0	0.1	0	0.32	0.34	2,023
76	3	male	urban_slum	other	0	0	0	1	wet	1	1	1	0	1	0	0	moderate	unknown	0	0	0	0	0	0	0	0.15	0	0.03	0.3	2,021
77	10	male	rural_pastoral	livestock_herder	1	1	1	1	dry	0	1	0	0	1	0	0	mild	malaria	0	0	0	0	0	0	0	0.08	0	0.33	0.44	2,022
78	61	female	urban_slum	urban_informal	0	0	1	0	wet	1	1	0	0	0	0	0	mild	typhoid	0	0	0	0	0	0	0	0.26	0	0.04	0.39	2,022
79	50	male	rural_farming	abattoir_worker	0	1	1	0	dry	0	1	1	0	0	1	0	moderate	malaria	0	0	0	0	0	1	0	0.14	0	0.15	0.36	2,021
80	25	male	rural_pastoral	livestock_herder	0	1	1	0	dry	0	0	1	0	0	0	0	moderate	typhoid	0	0	0	0	0	0	0	0	0	0.35	0.44	2,023
81	39	male	rural_pastoral	other	0	0	0	0	wet	0	1	0	0	0	0	0	mild	malaria	0	0	0	0	1	0	0	0.02	0	0.2	0.23	2,019
82	39	male	rural_farming	livestock_herder	1	1	1	1	wet	1	1	1	0	0	0	0	moderate	leptospirosis	0	0	0	0	0	1	0	0.22	0	0.23	0.46	2,022
83	21	male	rural_pastoral	abattoir_worker	1	1	1	1	wet	1	1	0	0	1	0	0	mild	hepatitis	0	0	0	0	0	0	0	0.2	0	0.11	0.22	2,020
84	26	male	rural_farming	fisher	1	0	0	1	wet	0	1	0	0	1	0	0	mild	unknown	0	0	0	0	0	0	0	0.21	0	0.34	0	2,021
85	44	male	rural_farming	rice_farmer	0	0	1	0	wet	1	0	0	0	0	0	0	mild	typhoid	0	0	0	0	0	0	0	0.31	0	0.06	0.28	2,022
86	12	male	rural_farming	other	1	1	0	1	wet	1	1	0	0	0	0	0	mild	typhoid	0	0	0	0	0	0	0	0.12	0	0.22	0.28	2,020
87	26	female	urban_slum	livestock_herder	1	1	1	1	wet	0	1	1	0	0	0	0	moderate	leptospirosis	1	1	0	1	0	0	0	0.12	0	0.17	0.38	2,021
88	18	male	rural_pastoral	other	1	0	0	1	wet	0	1	0	0	1	0	0	mild	typhoid	0	0	0	0	0	0	0	0.14	0	0.34	0.44	2,021
89	54	male	urban_slum	rice_farmer	0	1	1	0	wet	0	1	0	0	0	0	0	mild	unknown	0	0	0	0	1	0	0	0.17	0	0.36	0.3	2,021
90	24	male	peri_urban	urban_informal	1	0	0	1	wet	1	1	0	0	0	0	0	mild	malaria	0	0	0	0	0	0	1	0.03	0	0.54	0.4	2,023
91	23	male	rural_farming	urban_informal	0	1	1	0	wet	1	1	1	0	0	1	0	moderate	leptospirosis	0	0	0	0	1	1	0	0.02	0	0.21	0.1	2,021
92	35	male	peri_urban	urban_informal	0	0	0	0	wet	0	1	0	0	0	0	0	mild	unknown	0	0	0	0	0	0	1	0.3	0	0	0.27	2,019
93	26	female	rural_farming	child	1	1	0	1	wet	0	1	0	0	0	0	0	mild	unknown	0	0	0	0	0	0	0	0.07	0	0.2	0.38	2,021
94	22	male	rural_pastoral	livestock_herder	0	0	1	0	dry	0	1	0	0	0	0	0	mild	malaria	0	0	0	0	1	0	0	0.08	1	0.09	0.47	2,019
95	31	male	rural_farming	rice_farmer	0	0	1	1	wet	0	1	0	0	0	0	0	mild	typhoid	0	0	0	0	0	0	0	0.27	0	0	0.27	2,021
96	18	male	rural_farming	rice_farmer	0	1	1	0	wet	1	1	0	0	0	0	0	mild	dengue_like	0	0	0	0	1	0	0	0.35	0	0.29	0.25	2,021
97	30	male	urban_slum	livestock_herder	0	1	1	0	wet	0	1	0	0	0	0	0	mild	unknown	1	0	0	0	0	0	0	0.33	0	0.2	0.36	2,022
98	20	female	rural_farming	market_vendor	0	0	0	1	wet	1	1	0	0	0	0	0	mild	hepatitis	0	0	0	0	1	0	0	0.14	0	0.16	0.51	2,022
99	10	male	peri_urban	rice_farmer	0	1	1	1	dry	0	1	0	0	0	0	0	mild	malaria	0	0	0	0	0	0	0	0.21	0	0.11	0.38	2,020
100	36	male	urban_slum	urban_informal	0	0	1	1	wet	1	1	0	0	0	0	0	mild	typhoid	0	0	0	0	0	0	0	0.18	0	0.24	0.44	2,021

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Leptospirosis Environmental Surveillance

Abstract

Synthetic dataset modeling leptospirosis surveillance across three SSA scenarios. Captures flood/rodent exposure, clinical severity (Weil disease), misdiagnosis as malaria, lab confirmation, treatment, environmental monitoring, and One Health coordination. Based on Costa et al. (2015) PLOS NTDs, Allan et al. (2015), de Vries et al. (2014).

Parameterization Evidence

Parameter	Value	Source	Year
Global cases/yr	1.03 million, 58,900 deaths	Costa et al. PLOS NTDs	2015
Seroprevalence febrile Tanzania	15.4%	Allan et al. PLOS NTDs	2015
Misdiagnosed as malaria	5-15% of febrile cases	Maze et al. Clin Micro Inf	2018
Seroprevalence SSA by occupation	7-35%	De Vries et al. IJID	2014

Validation

Usage

from datasets import load_dataset
ds = load_dataset("electricsheepafrica/leptospirosis-environmental", name="moderate_awareness")
df = ds['train'].to_pandas()

References

Costa F et al. (2015). Global morbidity/mortality of leptospirosis. PLOS NTDs. DOI: 10.1371/journal.pntd.0003898
Allan KJ et al. (2015). Leptospirosis in northern Tanzania. PLOS NTDs. DOI: 10.1371/journal.pntd.0004230
Maze MJ et al. (2018). Febrile illness in SSA. Clin Microbiol Infect
De Vries SG et al. (2014). Leptospirosis in SSA. IJID. DOI: 10.1016/j.ijid.2014.06.013

License

CC-BY-4.0

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30,000