Elucidating the Design Space of Multimodal Protein Language Models
Paper
• 2504.11454 • Published
• 1
my protein
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Enhanced Sampling, Public Dataset and Generative Model for Drug-Protein Dissociation Dynamics
Paper • 2504.18367 • Published -
PRING: Rethinking Protein-Protein Interaction Prediction from Pairs to Graphs
Paper • 2507.05101 • Published • 12 -
Prot2Token: A Unified Framework for Protein Modeling via Next-Token Prediction
Paper • 2505.20589 • Published • 6 -
Energy Efficient Protein Language Models: Leveraging Small Language Models with LoRA for Controllable Protein Generation
Paper • 2411.05966 • Published • 4 -
Diffusion Language Models Are Versatile Protein Learners
Paper • 2402.18567 • Published • 2 -
Rethinking Text-based Protein Understanding: Retrieval or LLM?
Paper • 2505.20354 • Published • 1 -
PoseX: AI Defeats Physics Approaches on Protein-Ligand Cross Docking
Paper • 2505.01700 • Published • 1 -
AMix-1: A Pathway to Test-Time Scalable Protein Foundation Model
Paper • 2507.08920 • Published -
Learning Collective Variables for Protein Folding with Labeled Data Augmentation through Geodesic Interpolation
Paper • 2402.01542 • Published • 1 -
OneProt: Towards Multi-Modal Protein Foundation Models
Paper • 2411.04863 • Published • 1 -
Agentic End-to-End De Novo Protein Design for Tailored Dynamics Using a Language Diffusion Model
Paper • 2502.10173 • Published • 4 -
4D Diffusion for Dynamic Protein Structure Prediction with Reference Guided Motion Alignment
Paper • 2408.12419 • Published -
ProteinRPN: Towards Accurate Protein Function Prediction with Graph-Based Region Proposals
Paper • 2409.00610 • Published -
From thermodynamics to protein design: Diffusion models for biomolecule generation towards autonomous protein engineering
Paper • 2501.02680 • Published • 2 -
Steering Protein Family Design through Profile Bayesian Flow
Paper • 2502.07671 • Published -
Steering Generative Models with Experimental Data for Protein Fitness Optimization
Paper • 2505.15093 • Published -
Diffusion Sequence Models for Enhanced Protein Representation and Generation
Paper • 2506.08293 • Published • 1 -
DISPROTBENCH: A Disorder-Aware, Task-Rich Benchmark for Evaluating Protein Structure Prediction in Realistic Biological Contexts
Paper • 2507.02883 • Published -
Protap: A Benchmark for Protein Modeling on Realistic Downstream Applications
Paper • 2506.02052 • Published -
MotifBench: A standardized protein design benchmark for motif-scaffolding problems
Paper • 2502.12479 • Published • 1 -
P2DFlow: A Protein Ensemble Generative Model with SE(3) Flow Matching
Paper • 2411.17196 • Published