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Supervised fine-tuned (SFT) checkpoint of BioReason-Pro, a multimodal reasoning LLM for protein function prediction. This model integrates ESM3 protein embeddings, a GO graph encoder, and biological context (InterPro domains, STRING interactions) within a Qwen3-4B backbone to generate structured reasoning traces and functional annotations.
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**Training data:** [wanglab/bioreason-pro-sft-reasoning-data](https://huggingface.co/datasets/wanglab/bioreason-pro-sft-reasoning-data)
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See also:
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Supervised fine-tuned (SFT) checkpoint of BioReason-Pro, a multimodal reasoning LLM for protein function prediction. This model integrates ESM3 protein embeddings, a GO graph encoder, and biological context (InterPro domains, STRING interactions) within a Qwen3-4B backbone to generate structured reasoning traces and functional annotations.
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<div align="center" style="background-color: #1a1a2e; border: 2px solid #00B89E; border-radius: 12px; padding: 20px 30px; margin: 20px 0;">
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<h3 style="color: white;">🚀 Getting Started</h3>
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<p style="color: white;"><b>Check out the GitHub repo for full setup instructions and local inference guide:</b></p>
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<a href="https://github.com/bowang-lab/BioReason-Pro">
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<img src="https://img.shields.io/badge/Setup_Guide-GitHub-4A90E2?style=for-the-badge&logo=github&logoColor=white" alt="Setup Guide">
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</a>
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</div>
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**Training data:** [wanglab/bioreason-pro-sft-reasoning-data](https://huggingface.co/datasets/wanglab/bioreason-pro-sft-reasoning-data)
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See also:
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